MLMorizane LabHuman kidney organoids and translational disease modeling

Data Tools

Exploratory viewers for kidney organoid datasets.

Prototype data pages for interactive visualization of selected Morizane Lab and kidney organoid datasets.

Available prototype

Kidney organoid differentiation time course

Bulk RNA-seq

Kidney organoid differentiation time course: Day0-Day49

Plot bulk RNA-seq FPKM values across pluripotent, nephron progenitor, early nephron organoid, intermediate nephron organoid, and late nephron organoid stages.

 Single-nucleus RNA-seq

Day64 kidney organoid single-nucleus atlas

Explore a source-annotated UMAP with Control, Cisplatin x3, and Cisplatin x5 conditions, then plot gene expression on UMAP, dot plot, and combined violin views.

 Single-cell RNA-seq

Static and STR kidney organoid atlas

Explore source-annotated single-cell RNA-seq data from static and stirred-tank bioreactor kidney organoids with UMAP, dot plot, and combined violin views.