Data Tools
Kidney Organoid Differentiation Time Course Viewer
Bulk RNA-seq FPKM time course for kidney organoid differentiation from Day0 to Day49. Enter gene symbols or Ensembl IDs to visualize expression across differentiation stages.
Kidney organoid differentiation time course: Day0-Day49
This viewer is intended for exploratory visualization of bulk RNA-seq FPKM values. Low mRNA abundance in bulk data should not be interpreted as absence of the corresponding cell type or protein expression.
mRNA abundance and protein expression can diverge. Protein-level confirmation is recommended for markers or biological conclusions that depend on expression state.
Source note
Dataset provenance
This viewer provides an online exploratory visualization of bulk RNA-seq data associated with the kidney organoid injury and repair study by Gupta, Matsumoto, Hiratsuka et al., published in Science Translational Medicine in 2022.
Science DOI: 10.1126/scitranslmed.abj4772 | PMC full text: PMC9161367
Related chromatin-state information for corresponding stem-cell differentiation contexts, including Histone and Mint ChIP-seq assays, is available through the ENCODE stem cell differentiation matrix and can be consulted alongside gene expression patterns.